bioneuralnet.datasets.dataset_loader

Classes

DatasetLoader(dataset_name)	Load a pre-packaged multi-omics dataset from the package.
Path(*args, **kwargs)	PurePath subclass that can make system calls.

class bioneuralnet.datasets.dataset_loader.DatasetLoader(dataset_name: str)

Bases: object

Load a pre-packaged multi-omics dataset from the package.

Options for ‘dataset_name’:

“example”: Synthetic example. “monet”: Synthetic example. “brca”: Breast invasive carcinoma. “lgg”: Brain Lower Grade Glioma. “kipan”: Pan-kidney carcinoma.

Parameters:

• dataset_name (str) – Normalized dataset name.

• base_dir (Path) – Directory where the dataset folders live.

• data (dict[str, pd.DataFrame]) – Mapping from table name to loaded DataFrame.

property shape: dict[str, tuple[int, int]]

Dictionary mapping each table name to its (n_rows, n_cols) shape.